Photo of Brenda Nogueira

Brenda Nogueira

PhD Student in Compuer Science at University of Notre Dame.

Publications CV

About me

I am a Ph.D. student in Computer Science and Engineering at the University of Notre Dame and a Graduate Researcher at the NSF Center for Computer-Assisted Synthesis (C-CAS). My research focuses on Generative AI and Machine Learning Foundations, with an emphasis on learning from imbalanced data for drug discovery, treatment response, and materials science, as well as the development of agentic AI systems that enhance human trust and collaboration.

Outside research I like to walk with my dog, dancing, and exploring new places.

Honors & Awards

  • Scientific Artificial Intelligence (SAI) Graduate Fellowship — 2025
  • NSF Center for Computed Assisted Synthesys Travel Award, 2025
  • International Mathematics Without Borders Olympiad, Brazilian Section | Gold medal, 2016

Education

PhD in Computer Science and Engineer

University of Notre Dame — expected 2028

Advisors: Prof. Nitesh V. Chawla & Prof. Nuno Moniz.

MSc in Data Science

University of Porto — 2024

Thesis: Fish Size Measurement System for Long-Term Growth Studies in the Azores.

BSc in Mathematics with complementary education in Computer Science

University of Porto — 2022

News

  • ECML-PKDD Presentation — Oral presentation at SoGood Workshop about Automated Fish Size Measurement System for Long-Term Growth Studies in the Azores.
  • KDD Presentation — Poster presentation at MLoG-GenAI Workshop about Spectral Manifold Harmonization for Graph Imbalanced Regression.
  • ICML Presentation — Poster presentation at DIG-BUGS Workshop about Spectral Manifold Harmonization for Graph Imbalanced Regression.
  • Received SAI Graduate Fellowship — Starting Fall 2025 I'll be working on Graph Imbalanced Regression for Drug–Target prediction.

Publications [Google Scholar]

Preprints and Under Submissions

Peer-Reviewed Publications

Selected Experiences

Please kindly find my full experience list on my CV.

Research Assistant — Lucy Institute for Data & Society

2024 — present

  • Exploration of Artificial Intelligence challenges in graph-structured data, with a focus on imbalanced domains and chemistry data.

Research Fellow — INESCTEC

Jul 2023 - Dec 2023

  • Research Fellow at the CIBELE Project, dedicated to devising a comprehensive strategy for unraveling the intricacies inherent in cutting patterns, while also pioneering methods to anticipate and forecast complexity within novel pattern designs.

Research Fellow — FCUP

Oct 2022 - Jun 2022

  • Development of an automated email-entity association pipeline using natural language processing, text similarity, and entity linking methods. Scholarship financed by FCT.

Research Initiation Fellow — INESCTEC

Summer 2022

  • Development of a methodology for filling fissing information about landings in the OKEANOS dataset using machine learning and pre-processing strategies.

Projects

Spectral Manifold Harmonization for Graph Imbalanced Regression

Novel approach to address imbalanced regression challenges on graph-structured data by generating synthetic graph samples that preserve topological properties while focusing on the most relevant target distribution regions.

Code

Automated Machine Learning

Online platform for public use of the existing automated machine learning method, developed during INECTEC intership.

Code

Sleep Detection App

A web application for drowsiness detection developed during summer intership at INESCTEC.

Code

CV

You can download or view my full CV here:

Download CV (PDF)